Molecular biology software

analysisvisualizationWindows

A whole new visual canvas to explore single cell data Your roadmap to single cell data analysis Our software tools make processing, visualizing, and exploring your single cell data easy, even without bioinformatics help. Cell Ranger analysis pipelines Transform raw sequences into single cell insights Cell Ranger is a set of free analysis pipelines for processing Chromium Single Cell data. Start with Cell Ranger to align reads, generate cell-feature matrices, perform clustering and secondary analysis Cell Ranger can process raw sequencing data, perform QC, identify cell barcodes, and quantify gene expression levels at the single cell level. Accelerate your time to results with Cloud Analysis, a web app for running Cell Ranger Access Cell Ranger from your web browser with Cloud Analysis. Available in the United States and Canada. Loupe Browser 10 ways to dig into your data with Loupe Browser Loupe Browser is a desktop application for Windows and MacOS that allows you to interactively visualize data. 1Use Loupe to dive deeper into your Seurat analysis, no code required LoupeR is an R package that creates a Loupe Browser file from a Seurat object. With LoupeR, seamlessly explore Seurat data in Loupe without command-line data wrangling. 2Find differentially expressed genes in treatment vs. control experiments Easily perform and iterate on multi-sample comparisons. 3Rapidly visualize expression of your favorite genes 4Quickly plot your differential expression results Explore interactive heat maps and violin plots of differentially expressed genes. 5Easily annotate cell types