Mass spectrometry software ProteinPilot™

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ProteinPilot™ Software is a paradigm shift in protein identification and relative protein expression analysis for protein research. Combining sophisticated algorithms with an intuitive interface, you can now confidently identify more proteins and search large numbers of post translational modifications, without increasing search time or false positives. ProteinPilot Software is compatible with all proteomics MS/MS systems via the Easy The incredibly intuitive and easy to use interface is designed with biology in mind. Powerful Detect more peptides and PTMs than ever before with the Paragon™ Algorithm. Accurate Identify the right list of proteins, not the longest list, with the Pro Group™ Algorithm Extensive Peptide Identification with Every Search Search for hundreds of biological and other modifications, genetic variants and unexpected cleavages simultaneously with the Paragon™ Algorithm, and avoid an explosion of false positives. Industry Leading Pro Group The embedded, industry-leading Pro Group Algorithm for protein-grouping analysis enables you to quickly and easily achieve protein isoform and protein subset differentiation, as well as false positives suppression. Valuable FDR Analysis Automatic and rigorous false discovery rate (FDR) analysis uses decoy database searching to provide high quality, defensible protein identification results. A detailed report is generated with every search, with diagnostic dashboards to optimize sample prep and LC-MS acquisition conditions